KEGG OC: a large-scale automatic construction of taxonomy-based ortholog clusters
نویسندگان
چکیده
منابع مشابه
KEGG OC: a large-scale automatic construction of taxonomy-based ortholog clusters
The identification of orthologous genes in an increasing number of fully sequenced genomes is a challenging issue in recent genome science. Here we present KEGG OC (http://www.genome.jp/tools/oc/), a novel database of ortholog clusters (OCs). The current version of KEGG OC contains 1 176 030 OCs, obtained by clustering 8 357 175 genes in 2112 complete genomes (153 eukaryotes, 1830 bacteria and ...
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Classification of Protein Sequences into Paralog and Ortholog Clusters Using Sequence Similarity Profiles of KEGG/SSDB
We are constructing KEGG/OC (Ortholog Clusters) from KEGG/SSDB (Sequence Similarity DataBase) [2]. KEGG/SSDB contains exhaustive protein sequence similarity scores of completed and nearly completed genomes calculated by the SSEARCH program [3]. KEGG/OC is constructed automatically from the graph analysis of searching cliques with an appropriate definition for the profiles of similarity scores. ...
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ژورنال
عنوان ژورنال: Nucleic Acids Research
سال: 2012
ISSN: 0305-1048,1362-4962
DOI: 10.1093/nar/gks1239